IL_4V9I_290

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AUGAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_290 not in the Motif Atlas

Homologous match to IL_7RQB_049

Geometric discrepancy: 0.051

The information below is about IL_7RQB_049

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4V9I|1|DA|A|1307
4V9I|1|DA|U|1308
4V9I|1|DA|G|1309
4V9I|1|DA|A|1310
4V9I|1|DA|G|1311
4V9I|1|DA|U|1312
4V9I|1|DA|A|1313
4V9I|1|DA|A|1314
*
4V9I|1|DA|U|2032
4V9I|1|DA|G|2033
4V9I|1|DA|A|2034
4V9I|1|DA|A|2035
4V9I|1|DA|A|2036
4V9I|1|DA|U|2037
4V9I|1|DA|U|2038

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D5

50S ribosomal protein L32

Chain DF

50S ribosomal protein L4

Chain DW

50S ribosomal protein L22