IL_4V9I_300

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AGAAG*UGGU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_300 not in the Motif Atlas

Homologous match to IL_7RQB_060

Geometric discrepancy: 0.1124

The information below is about IL_7RQB_060

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_07235.1

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

4V9I|1|DA|A|1515
4V9I|1|DA|G|1516
4V9I|1|DA|A|1517
4V9I|1|DA|A|1518
4V9I|1|DA|G|1519
*
4V9I|1|DA|U|1565
4V9I|1|DA|G|1566
4V9I|1|DA|G|1567
4V9I|1|DA|U|1568

Current chains

Chain DA

23S ribosomal RNA

Nearby chains