IL_4V9I_307

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

4V9I|1|DA|G|1745

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_307 not in the Motif Atlas

Homologous match to IL_7RQB_068

Geometric discrepancy: 0.1138

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

4V9I|1|DA|C|1732
4V9I|1|DA|G|1733
4V9I|1|DA|U|1734
4V9I|1|DA|A|1735
4V9I|1|DA|A|1736
4V9I|1|DA|C|1737
*
4V9I|1|DA|G|1742
4V9I|1|DA|G|1743
4V9I|1|DA|A|1744
4V9I|1|DA|G|1745
4V9I|1|DA|A|1746
4V9I|1|DA|A|1747
4V9I|1|DA|G|1748

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain DD

50S ribosomal protein L2