IL_4V9I_326

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

4V9I|1|DA|U|2153

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_326 not in the Motif Atlas

Homologous match to IL_5J7L_330

Geometric discrepancy: 0.3438

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

4V9I|1|DA|C|2150
4V9I|1|DA|U|2151
4V9I|1|DA|G|2152
4V9I|1|DA|U|2153
4V9I|1|DA|G|2154
4V9I|1|DA|A|2155
4V9I|1|DA|A|2156
4V9I|1|DA|C|2157
*
4V9I|1|DA|G|2176
4V9I|1|DA|G|2177
4V9I|1|DA|G|2178
4V9I|1|DA|A|2179
4V9I|1|DA|G|2180

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DC

50S Ribosomal protein L1