IL_4V9I_333

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

4V9I|1|DA|U|2502

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_333 not in the Motif Atlas

Geometric match to IL_7RQB_094

Geometric discrepancy: 0.0871

The information below is about IL_7RQB_094

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_92788.2

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

14

Unit IDs

4V9I|1|DA|A|2470
4V9I|1|DA|U|2471
4V9I|1|DA|C|2472
*
4V9I|1|DA|G|2500
4V9I|1|DA|G|2501
4V9I|1|DA|U|2502
4V9I|1|DA|U|2503
4V9I|1|DA|U|2504

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain CY

A-SITE tRNA

Chain D0

50S ribosomal protein L27

Chain DQ

50S ribosomal protein L16