IL_4V9I_341

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

4V9I|1|DA|G|2666

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_341 not in the Motif Atlas

Homologous match to IL_4WF9_100

Geometric discrepancy: 0.2373

The information below is about IL_4WF9_100

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V9I|1|DA|C|2663
4V9I|1|DA|U|2664
4V9I|1|DA|A|2665
4V9I|1|DA|G|2666
4V9I|1|DA|U|2667
4V9I|1|DA|A|2668
4V9I|1|DA|C|2669
*
4V9I|1|DA|G|2674
4V9I|1|DA|G|2675
4V9I|1|DA|A|2676
4V9I|1|DA|C|2677
4V9I|1|DA|C|2678
4V9I|1|DA|G|2679

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DH

50S ribosomal protein L6