IL_4V9I_344

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CU*AUAAG

Length

7 nucleotides

Bulged bases

4V9I|1|DA|A|2725

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_344 not in the Motif Atlas

Homologous match to IL_7A0S_097

Geometric discrepancy: 0.082

The information below is about IL_7A0S_097

Detailed Annotation

Multiple bulged bases

Broad Annotation

Multiple bulged bases

Motif group

IL_44609.1

Basepair signature

cWW-cWW

Number of instances in this motif group

28

Unit IDs

4V9I|1|DA|C|2706
4V9I|1|DA|U|2707
*
4V9I|1|DA|A|2722
4V9I|1|DA|U|2723
4V9I|1|DA|A|2724
4V9I|1|DA|A|2725
4V9I|1|DA|G|2726

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DR

50S ribosomal protein L17

Chain DT

50S ribosomal protein L19