IL_4V9I_358

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAUGCCAC*GGAGCUAAUC

Length

18 nucleotides

Bulged bases

4V9I|1|AA|U|1257, 4V9I|1|AA|C|1260, 4V9I|1|AA|A|1280, 4V9I|1|AA|U|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9I|1|AA|G|1255
4V9I|1|AA|A|1256
4V9I|1|AA|U|1257
4V9I|1|AA|G|1258
4V9I|1|AA|C|1259
4V9I|1|AA|C|1260
4V9I|1|AA|A|1261
4V9I|1|AA|C|1262
*
4V9I|1|AA|G|1273
4V9I|1|AA|G|1274
4V9I|1|AA|A|1275
4V9I|1|AA|G|1276
4V9I|1|AA|C|1277
4V9I|1|AA|U|1278
4V9I|1|AA|A|1279
4V9I|1|AA|A|1280
4V9I|1|AA|U|1281
4V9I|1|AA|C|1282

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AC

30S Ribosomal protein S3

Chain AJ

30S Ribosomal protein S10

Chain AN

30S Ribosomal protein S14

Chain AU

30S Ribosomal protein THX