Loop IL_4V9I

3D structure

PDB id: 4V9I (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å

Loop

Sequence: AUAGCUCAGUCGGUAGAGCAG*CGUGUCCUUGGUUCGAUUCCGAGU
Length: 45 nucleotides
Bulged bases: 4V9I|1|AW|U|16, 4V9I|1|AW|C|17, 4V9I|1|AW|U|20, 4V9I|1|AW|U|47
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V9I|1|AW|A|7
4V9I|1|AW|U|8
4V9I|1|AW|A|9
4V9I|1|AW|G|10
4V9I|1|AW|C|11
4V9I|1|AW|U|12
4V9I|1|AW|C|13
4V9I|1|AW|A|14
4V9I|1|AW|G|15
4V9I|1|AW|U|16
4V9I|1|AW|C|17
4V9I|1|AW|G|18
4V9I|1|AW|G|19
4V9I|1|AW|U|20
4V9I|1|AW|A|21
4V9I|1|AW|G|22
4V9I|1|AW|A|23
4V9I|1|AW|G|24
4V9I|1|AW|C|25
4V9I|1|AW|A|26
4V9I|1|AW|G|27
*
4V9I|1|AW|C|43
4V9I|1|AW|G|44
4V9I|1|AW|U|45
4V9I|1|AW|G|46
4V9I|1|AW|U|47
4V9I|1|AW|C|48
4V9I|1|AW|C|49
4V9I|1|AW|U|50
4V9I|1|AW|U|51
4V9I|1|AW|G|52
4V9I|1|AW|G|53
4V9I|1|AW|U|54
4V9I|1|AW|U|55
4V9I|1|AW|C|56
4V9I|1|AW|G|57
4V9I|1|AW|A|58
4V9I|1|AW|U|59
4V9I|1|AW|U|60
4V9I|1|AW|C|61
4V9I|1|AW|C|62
4V9I|1|AW|G|63
4V9I|1|AW|A|64
4V9I|1|AW|G|65
4V9I|1|AW|U|66

Current chains

Chain AW: E-SITE tRNA

Nearby chains

Chain AG: 30S Ribosomal protein S7
Chain AK: 30S Ribosomal protein S11
Chain B6: 50S ribosomal protein L33
Chain BA: Large subunit ribosomal RNA; LSU rRNA
Chain BC: 50S ribosomal protein L1

IL_4V9I_359