IL_4V9I_362

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUGCGUAGGAUAGG*CCCUG

Length

19 nucleotides

Bulged bases

4V9I|1|BA|G|2137, 4V9I|1|BA|C|2200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9I|1|BA|C|2129
4V9I|1|BA|U|2130
4V9I|1|BA|G|2131
4V9I|1|BA|C|2132
4V9I|1|BA|G|2133
4V9I|1|BA|U|2134
4V9I|1|BA|A|2135
4V9I|1|BA|G|2136
4V9I|1|BA|G|2137
4V9I|1|BA|A|2138
4V9I|1|BA|U|2139
4V9I|1|BA|A|2140
4V9I|1|BA|G|2141
4V9I|1|BA|G|2142
*
4V9I|1|BA|C|2198
4V9I|1|BA|C|2199
4V9I|1|BA|C|2200
4V9I|1|BA|U|2201
4V9I|1|BA|G|2202

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AW

Transfer RNA; tRNA

Chain BC

50S ribosomal protein L1

Chain CA

Small subunit ribosomal RNA; SSU rRNA