IL_4V9I_365

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGAAU*GGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_365 not in the Motif Atlas

Homologous match to IL_4LFB_065

Geometric discrepancy: 0.0995

The information below is about IL_4LFB_065

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.2

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

4V9I|1|CA|G|657
4V9I|1|CA|G|658
4V9I|1|CA|A|659
4V9I|1|CA|A|660
4V9I|1|CA|U|661
*
4V9I|1|CA|G|697
4V9I|1|CA|G|698
4V9I|1|CA|A|699
4V9I|1|CA|A|700
4V9I|1|CA|C|701

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CF

30S Ribosomal protein S6

Chain CK

30S Ribosomal protein S11

Chain CR

30S Ribosomal protein S18

Chain DD

50S ribosomal protein L2