IL_4V9I_367

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCG*CUGG

Length

7 nucleotides

Bulged bases

4V9I|1|CA|U|1178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_367 not in the Motif Atlas

Homologous match to IL_4LFB_047

Geometric discrepancy: 0.4991

The information below is about IL_4LFB_047

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_68118.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

28

Unit IDs

4V9I|1|CA|C|1042
4V9I|1|CA|C|1043
4V9I|1|CA|G|1044
*
4V9I|1|CA|C|1177
4V9I|1|CA|U|1178
4V9I|1|CA|G|1179
4V9I|1|CA|G|1180

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CC

30S Ribosomal protein S3

Chain CE

30S Ribosomal protein S5

Chain CI

30S Ribosomal protein S9

Chain CJ

30S Ribosomal protein S10

Chain CN

30S Ribosomal protein S14

Chain CY

A-SITE tRNA