3D structure

PDB id
4V9I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
CCG*CUGG
Length
7 nucleotides
Bulged bases
4V9I|1|CA|U|1178
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V9I_367 not in the Motif Atlas
Homologous match to IL_4LFB_047
Geometric discrepancy: 0.4991
The information below is about IL_4LFB_047
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_68118.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
27

Unit IDs

4V9I|1|CA|C|1042
4V9I|1|CA|C|1043
4V9I|1|CA|G|1044
*
4V9I|1|CA|C|1177
4V9I|1|CA|U|1178
4V9I|1|CA|G|1179
4V9I|1|CA|G|1180

Current chains

Chain CA
16S ribosomal RNA

Nearby chains

Chain CC
30S Ribosomal protein S3
Chain CE
30S Ribosomal protein S5
Chain CI
30S Ribosomal protein S9
Chain CJ
30S Ribosomal protein S10
Chain CN
30S Ribosomal protein S14
Chain CY
A-SITE tRNA

Coloring options:


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