IL_4V9I_370
3D structure
- PDB id
- 4V9I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GGAACUCUG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V9I_370 not in the Motif Atlas
- Homologous match to IL_9DFE_066
- Geometric discrepancy: 0.076
- The information below is about IL_9DFE_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22854.4
- Basepair signature
- cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
- Number of instances in this motif group
- 7
Unit IDs
4V9I|1|DA|G|1712
4V9I|1|DA|G|1713
4V9I|1|DA|A|1714
4V9I|1|DA|A|1715
4V9I|1|DA|C|1716
4V9I|1|DA|U|1717
4V9I|1|DA|C|1718
4V9I|1|DA|U|1719
4V9I|1|DA|G|1720
*
4V9I|1|DA|C|2011
4V9I|1|DA|U|2012
4V9I|1|DA|G|2013
4V9I|1|DA|U|2014
4V9I|1|DA|C|2015
Current chains
- Chain DA
- 23S ribosomal RNA
Nearby chains
- Chain DE
- 50S ribosomal protein L3
- Chain DO
- 50S ribosomal protein L14
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