IL_4V9I_378

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AGGGAACC*GGGUGCCCCGCGAGGGGAGCCCU

Length

31 nucleotides

Bulged bases

4V9I|1|CA|A|984, 4V9I|1|CA|U|1004, 4V9I|1|CA|G|1005

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9I|1|CA|A|979
4V9I|1|CA|G|980
4V9I|1|CA|G|981
4V9I|1|CA|G|982
4V9I|1|CA|A|983
4V9I|1|CA|A|984
4V9I|1|CA|C|985
4V9I|1|CA|C|986
*
4V9I|1|CA|G|1001
4V9I|1|CA|G|1002
4V9I|1|CA|G|1003
4V9I|1|CA|U|1004
4V9I|1|CA|G|1005
4V9I|1|CA|C|1006
4V9I|1|CA|C|1007
4V9I|1|CA|C|1008
4V9I|1|CA|C|1009
4V9I|1|CA|G|1010
4V9I|1|CA|C|1011
4V9I|1|CA|G|1012
4V9I|1|CA|A|1013
4V9I|1|CA|G|1014
4V9I|1|CA|G|1015
4V9I|1|CA|G|1016
4V9I|1|CA|G|1017
4V9I|1|CA|A|1018
4V9I|1|CA|G|1019
4V9I|1|CA|C|1020
4V9I|1|CA|C|1021
4V9I|1|CA|C|1022
4V9I|1|CA|U|1023

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain AG

30S Ribosomal protein S7

Chain BA

Large subunit ribosomal RNA; LSU rRNA