IL_4V9J_075

3D structure

PDB id

4V9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.86 Å

Loop

Sequence

GGAACUG*CUCAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9J_075 not in the Motif Atlas

Homologous match to IL_7A0S_006

Geometric discrepancy: 0.1258

The information below is about IL_7A0S_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.4

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

4V9J|1|BA|G|188
4V9J|1|BA|G|189
4V9J|1|BA|A|190
4V9J|1|BA|A|191
4V9J|1|BA|C|192
4V9J|1|BA|U|193
4V9J|1|BA|G|194
*
4V9J|1|BA|C|201
4V9J|1|BA|U|202
4V9J|1|BA|C|203
4V9J|1|BA|A|204
4V9J|1|BA|G|205
4V9J|1|BA|U|206
4V9J|1|BA|A|207
4V9J|1|BA|C|208

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B1

50S ribosomal protein L28

Chain B8

50S ribosomal protein L35

Chain BP

50S ribosomal protein L15