IL_4V9J_161

3D structure

PDB id

4V9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.86 Å

Loop

Sequence

CCGAG*CGGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9J_161 not in the Motif Atlas

Geometric match to IL_4V88_474

Geometric discrepancy: 0.382

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

4V9J|1|BA|C|2466
4V9J|1|BA|C|2467
4V9J|1|BA|G|2468
4V9J|1|BA|A|2469
4V9J|1|BA|G|2470
*
4V9J|1|BA|C|2480
4V9J|1|BA|G|2481
4V9J|1|BA|G|2482
4V9J|1|BA|C|2483
4V9J|1|BA|G|2484

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B9

50S ribosomal protein L36

Chain BQ

50S ribosomal protein L16

Chain BZ

50S ribosomal protein L25