IL_4V9J_204

3D structure

PDB id

4V9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.86 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

4V9J|1|CA|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9J_204 not in the Motif Atlas

Homologous match to IL_6CZR_134

Geometric discrepancy: 0.1917

The information below is about IL_6CZR_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.5

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

4V9J|1|CA|C|569
4V9J|1|CA|G|570
4V9J|1|CA|U|571
4V9J|1|CA|A|572
4V9J|1|CA|A|573
4V9J|1|CA|A|574
4V9J|1|CA|G|575
*
4V9J|1|CA|C|880
4V9J|1|CA|G|881

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CL

30S ribosomal protein S12

Chain CQ

30S ribosomal protein S17