IL_4V9J_208
3D structure
- PDB id
- 4V9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.86 Å
Loop
- Sequence
- UGAAAGAC*GGGGAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V9J_208 not in the Motif Atlas
- Homologous match to IL_4LFB_026
- Geometric discrepancy: 0.1798
- The information below is about IL_4LFB_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04211.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
4V9J|1|CA|U|605
4V9J|1|CA|G|606
4V9J|1|CA|A|607
4V9J|1|CA|A|608
4V9J|1|CA|A|609
4V9J|1|CA|G|610
4V9J|1|CA|A|611
4V9J|1|CA|C|612
*
4V9J|1|CA|G|628
4V9J|1|CA|G|629
4V9J|1|CA|G|630
4V9J|1|CA|G|631
4V9J|1|CA|A|632
4V9J|1|CA|G|633
Current chains
- Chain CA
- 16S ribosomal RNA
Nearby chains
- Chain CD
- 30S ribosomal protein S4
- Chain CH
- 30S ribosomal protein S8
- Chain CP
- 30S ribosomal protein S16
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