IL_4V9J_213

3D structure

PDB id

4V9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.86 Å

Loop

Sequence

GAGUAG*CGCAGAUAC

Length

15 nucleotides

Bulged bases

4V9J|1|CA|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9J_213 not in the Motif Atlas

Homologous match to IL_4LFB_031

Geometric discrepancy: 0.1668

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

4V9J|1|CA|G|683
4V9J|1|CA|A|684
4V9J|1|CA|G|685
4V9J|1|CA|U|686
4V9J|1|CA|A|687
4V9J|1|CA|G|688
*
4V9J|1|CA|C|699
4V9J|1|CA|G|700
4V9J|1|CA|C|701
4V9J|1|CA|A|702
4V9J|1|CA|G|703
4V9J|1|CA|A|704
4V9J|1|CA|U|705
4V9J|1|CA|A|706
4V9J|1|CA|C|707

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CK

30S ribosomal protein S11

Chain DA

Large subunit ribosomal RNA; LSU rRNA