IL_4V9J_242
3D structure
- PDB id
- 4V9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.86 Å
Loop
- Sequence
- CAC*GAAG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V9J_242 not in the Motif Atlas
- Geometric match to IL_3C3Z_002
- Geometric discrepancy: 0.3741
- The information below is about IL_3C3Z_002
- Detailed Annotation
- Decoding loop related
- Broad Annotation
- Decoding loop related
- Motif group
- IL_53541.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
4V9J|1|CA|C|1407
4V9J|1|CA|A|1408
4V9J|1|CA|C|1409
*
4V9J|1|CA|G|1491
4V9J|1|CA|A|1492
4V9J|1|CA|A|1493
4V9J|1|CA|G|1494
Current chains
- Chain CA
- 16S ribosomal RNA
Nearby chains
- Chain CL
- 30S ribosomal protein S12
- Chain CU
- Viomycin
- Chain CY
- Elongation factor G
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
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