IL_4V9K_013

3D structure

PDB id

4V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

4V9K|1|AA|U|244, 4V9K|1|AA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9K_013 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.133

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.4

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

4V9K|1|AA|C|242
4V9K|1|AA|A|243
4V9K|1|AA|U|244
4V9K|1|AA|C|245
4V9K|1|AA|A|246
4V9K|1|AA|G|247
*
4V9K|1|AA|C|277
4V9K|1|AA|G|278
4V9K|1|AA|A|279
4V9K|1|AA|C|280
4V9K|1|AA|G|281
4V9K|1|AA|A|282
4V9K|1|AA|C|283
4V9K|1|AA|G|284

Current chains

Chain AA

ribosomal RNA 16S

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AQ

30S ribosomal protein S17