IL_4V9K_034

3D structure

PDB id

4V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGGAG*UC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9K_034 not in the Motif Atlas

Homologous match to IL_5J7L_036

Geometric discrepancy: 0.1258

The information below is about IL_5J7L_036

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

4V9K|1|AA|G|774
4V9K|1|AA|G|775
4V9K|1|AA|G|776
4V9K|1|AA|A|777
4V9K|1|AA|G|778
*
4V9K|1|AA|U|804
4V9K|1|AA|C|805

Current chains

Chain AA

ribosomal RNA 16S

Nearby chains

Chain AK

30S ribosomal protein S11

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BD

50S ribosomal protein L2