IL_4V9K_051

3D structure

PDB id

4V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAUG*CUAAUC

Length

10 nucleotides

Bulged bases

4V9K|1|AA|U|1257, 4V9K|1|AA|U|1278, 4V9K|1|AA|A|1280, 4V9K|1|AA|U|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9K_051 not in the Motif Atlas

Homologous match to IL_4LFB_052

Geometric discrepancy: 0.3365

The information below is about IL_4LFB_052

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_08849.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

4V9K|1|AA|G|1255
4V9K|1|AA|A|1256
4V9K|1|AA|U|1257
4V9K|1|AA|G|1258
*
4V9K|1|AA|C|1277
4V9K|1|AA|U|1278
4V9K|1|AA|A|1279
4V9K|1|AA|A|1280
4V9K|1|AA|U|1281
4V9K|1|AA|C|1282

Current chains

Chain AA

ribosomal RNA 16S

Nearby chains

Chain AC

30S ribosomal protein S3

Chain AJ

30S ribosomal protein S10

Chain AN

30S ribosomal protein S14 type Z