IL_4V9K_124

3D structure

PDB id

4V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UG*CACAA

Length

7 nucleotides

Bulged bases

4V9K|1|BA|C|1585

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9K_124 not in the Motif Atlas

Homologous match to IL_7RQB_054

Geometric discrepancy: 0.5015

The information below is about IL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_67474.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

4V9K|1|BA|U|1415
4V9K|1|BA|G|1416
*
4V9K|1|BA|C|1582
4V9K|1|BA|A|1583
4V9K|1|BA|C|1585
4V9K|1|BA|A|1586
4V9K|1|BA|A|1587

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA