IL_4V9K_157

3D structure

PDB id

4V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUCC*GGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9K_157 not in the Motif Atlas

Geometric match to IL_8VTW_044

Geometric discrepancy: 0.3722

The information below is about IL_8VTW_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73554.3

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

10

Unit IDs

4V9K|1|BA|G|2400
4V9K|1|BA|U|2401
4V9K|1|BA|C|2402
4V9K|1|BA|C|2403
*
4V9K|1|BA|G|2414
4V9K|1|BA|G|2415
4V9K|1|BA|C|2416

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B6

50S ribosomal protein L33

Chain B8

50S ribosomal protein L35

Chain BP

50S ribosomal protein L15