Motif IL_73554.3 Version IL_73554.3 of this group appears in releases 3.90 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5ZTM_001 | 5ZTM | 0.4278 | 0 | Isolated non-canonical cWW pair | C | non-coding mRNA sequence roX2 | U | 118 | A | 119 | G | 120 | * | C | 162 | C | 163 | G | 164 | cWW | ncWW | cWW |
| 2 | IL_5E81_401 | 5E81 | 0.3837 | 0 | 3L | tRNA | C | 67 | G | 68 | A | 69 | * | U | 4 | C | 5 | G | 6 | cWW | cWS | cWW | |
| 3 | IL_5J7L_286 | 5J7L | 0.1003 | 1 | Isolated cWS basepair | DA | LSU rRNA | C | 1196 | G | 1197 | U | 1198 | * | A | 1247 | U | 1249 | G | 1250 | cWW | cWS | cWW |
| 4 | IL_4WF9_044 | 4WF9 | 0.0000 | 1 | Isolated cWS basepair | X | LSU rRNA | C | 1235 | G | 1236 | U | 1237 | * | A | 1285 | U | 1287 | G | 1288 | cWW | cWS | cWW |
| 5 | IL_8VTW_044 | 8VTW | 0.0826 | 1 | Isolated cWS basepair (H) | 1A | LSU rRNA | C | 1196 | G | 1197 | U | 1198 | * | A | 1247 | U | 1249 | G | 1250 | cWW | cWS | cWW |
| 6 | IL_7A0S_041 | 7A0S | 0.1269 | 1 | Isolated cWS basepair | X | LSU rRNA | C | 1210 | G | 1211 | U | 1212 | * | A | 1260 | U | 1262 | G | 1263 | cWW | cWS | cWW |
| 7 | IL_5TBW_057 | 5TBW | 0.1829 | 1 | Isolated cWS basepair | 1 | LSU rRNA | C | 1376 | G | 1377 | U | 1378 | * | A | 1428 | U | 1430 | G | 1431 | cWW | cWS | cWW |
| 8 | IL_8C3A_061 | 8C3A | 0.1873 | 1 | Isolated cWS basepair (H) | 1 | LSU rRNA | C | 1372 | G | 1373 | U | 1374 | * | A | 1424 | U | 1426 | G | 1427 | cWW | cWS | cWW |
| 9 | IL_4V9F_046 | 4V9F | 0.1662 | 1 | Isolated cWS basepair | 0 | LSU rRNA | C | 1301 | G | 1302 | C | 1303 | * | G | 1351 | C | 1353 | G | 1354 | cWW | cWS | cWW |
| 10 | IL_1U6B_001 | 1U6B | 0.3101 | 1 | Isolated non-canonical cWW pair | B | 197-MER | C | 29 | A | 30 | C | 31 | * | G | 19 | C | 20 | G | 22 | cWW | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGU*AGUG | 6 |
| UAG*CCG | 1 |
| CGA*UCG | 1 |
| CGC*GACG | 1 |
| CAC*GCCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*GU | 6 |
| A*C | 1 |
| G*C | 1 |
| G*AC | 1 |
| A*CC | 1 |
Release history
| Release | 3.90 |
|---|---|
| Date | 2024-11-06 |
| Status | Updated, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Isolated cWS basepair (5)
- Isolated non-canonical cWW pair (2)
- Isolated cWS basepair (H) (2)
- (1)
- Basepair signature
- cWW-cWS-cWW
- Heat map statistics
- Min 0.06 | Avg 0.26 | Max 0.53
Coloring options: