3D structure

PDB id
4V9K (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.
Experimental method
X-RAY DIFFRACTION
Resolution
3.5 Å

Loop

Sequence
CAUG*CAG
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V9K_186 not in the Motif Atlas
Geometric match to IL_7RQB_031
Geometric discrepancy: 0.267
The information below is about IL_7RQB_031
Detailed Annotation
Minor groove platform with extra cWW
Broad Annotation
Minor groove platform
Motif group
IL_46796.1
Basepair signature
cWW-L-R-L-cWW
Number of instances in this motif group
6

Unit IDs

4V9K|1|CA|C|54
4V9K|1|CA|A|55
4V9K|1|CA|U|56
4V9K|1|CA|G|57
*
4V9K|1|CA|C|355
4V9K|1|CA|A|356
4V9K|1|CA|G|357

Current chains

Chain CA
ribosomal RNA 16S

Nearby chains

Chain CT
30S ribosomal protein S20
Chain CY
Elongation factor G

Coloring options:


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