IL_4V9K_232

3D structure

PDB id

4V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCAGC*GG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9K_232 not in the Motif Atlas

Homologous match to IL_4LFB_049

Geometric discrepancy: 0.2298

The information below is about IL_4LFB_049

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_87975.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

10

Unit IDs

4V9K|1|CA|C|1128
4V9K|1|CA|C|1129
4V9K|1|CA|A|1130
4V9K|1|CA|G|1131
4V9K|1|CA|C|1132
*
4V9K|1|CA|G|1142
4V9K|1|CA|G|1143

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CI

30S ribosomal protein S9