IL_4V9K_246

3D structure

PDB id

4V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGGGAG*CAG

Length

9 nucleotides

Bulged bases

4V9K|1|CA|G|1440|||C

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9K_246 not in the Motif Atlas

Homologous match to IL_4LFB_064

Geometric discrepancy: 0.2562

The information below is about IL_4LFB_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34117.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

7

Unit IDs

4V9K|1|CA|C|1440
4V9K|1|CA|G|1440|||A
4V9K|1|CA|G|1440|||B
4V9K|1|CA|G|1440|||C
4V9K|1|CA|A|1440|||D
4V9K|1|CA|G|1440|||E
*
4V9K|1|CA|C|1440|||N
4V9K|1|CA|A|1440|||O
4V9K|1|CA|G|1461

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CT

30S ribosomal protein S20

Chain DA

Large subunit ribosomal RNA; LSU rRNA

Chain DT

50S ribosomal protein L19