IL_4V9K_352

3D structure

PDB id

4V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGG*CCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GGG,CCC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9K_352 not in the Motif Atlas

Geometric match to IL_353D_001

Geometric discrepancy: 0.1838

The information below is about IL_353D_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

4V9K|1|DA|G|2640
4V9K|1|DA|G|2641
4V9K|1|DA|G|2642
*
4V9K|1|DA|C|2772
4V9K|1|DA|C|2773
4V9K|1|DA|C|2774

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DE

50S ribosomal protein L3

Chain DN

50S ribosomal protein L13