IL_4V9K_371
3D structure
- PDB id
- 4V9K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- GGAAUU*AGGAAC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V9K_371 not in the Motif Atlas
- Geometric match to IL_5TBW_476
- Geometric discrepancy: 0.3619
- The information below is about IL_5TBW_476
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31007.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V9K|1|AA|G|673
4V9K|1|AA|G|674
4V9K|1|AA|A|675
4V9K|1|AA|A|676
4V9K|1|AA|U|677
4V9K|1|AA|U|678
*
4V9K|1|AA|A|712
4V9K|1|AA|G|713
4V9K|1|AA|G|714
4V9K|1|AA|A|715
4V9K|1|AA|A|716
4V9K|1|AA|C|717
Current chains
- Chain AA
- ribosomal RNA 16S
Nearby chains
- Chain AF
- 30S ribosomal protein S6
- Chain AK
- 30S ribosomal protein S11
- Chain AR
- 30S ribosomal protein S18
- Chain BD
- 50S ribosomal protein L2
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