IL_4V9L_040

3D structure

PDB id

4V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

4V9L|1|AA|A|1227

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9L_040 not in the Motif Atlas

Homologous match to IL_4LFB_038

Geometric discrepancy: 0.3974

The information below is about IL_4LFB_038

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

58

Unit IDs

4V9L|1|AA|G|953
4V9L|1|AA|G|954
*
4V9L|1|AA|C|1226
4V9L|1|AA|A|1227
4V9L|1|AA|C|1228

Current chains

Chain AA

ribosomal RNA 16S

Nearby chains

Chain AM

30S ribosomal protein S13

Chain AS

30S ribosomal protein S19

Chain AW

Transfer RNA; tRNA