3D structure

PDB id
4V9L (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.
Experimental method
X-RAY DIFFRACTION
Resolution
3.5 Å

Loop

Sequence
CUGUGAAC*GGGAG
Length
13 nucleotides
Bulged bases
4V9L|1|BA|U|2132
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V9L_151 not in the Motif Atlas
Homologous match to IL_5J7L_330
Geometric discrepancy: 0.362
The information below is about IL_5J7L_330
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_70923.9
Basepair signature
cWW-tSS-tSH-L-tHS-tHS-cWW
Number of instances in this motif group
27

Unit IDs

4V9L|1|BA|C|2129
4V9L|1|BA|U|2130
4V9L|1|BA|G|2131
4V9L|1|BA|U|2132
4V9L|1|BA|G|2133
4V9L|1|BA|A|2134
4V9L|1|BA|A|2135
4V9L|1|BA|C|2136
*
4V9L|1|BA|G|2155
4V9L|1|BA|G|2156
4V9L|1|BA|G|2157
4V9L|1|BA|A|2158
4V9L|1|BA|G|2159

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain BC
50S ribosomal protein L1

Coloring options:


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