IL_4V9L_159

3D structure

PDB id

4V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCGAG*CGGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9L_159 not in the Motif Atlas

Homologous match to IL_5J7L_338

Geometric discrepancy: 0.2308

The information below is about IL_5J7L_338

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4V9L|1|BA|C|2466
4V9L|1|BA|C|2467
4V9L|1|BA|G|2468
4V9L|1|BA|A|2469
4V9L|1|BA|G|2470
*
4V9L|1|BA|C|2480
4V9L|1|BA|G|2481
4V9L|1|BA|G|2482
4V9L|1|BA|C|2483
4V9L|1|BA|G|2484

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B9

50S ribosomal protein L36

Chain BQ

50S ribosomal protein L16

Chain BZ

50S ribosomal protein L25