IL_4V9L_197

3D structure

PDB id

4V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UUC*GA

Length

5 nucleotides

Bulged bases

4V9L|1|CA|U|368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9L_197 not in the Motif Atlas

Homologous match to IL_4LFB_014

Geometric discrepancy: 0.1092

The information below is about IL_4LFB_014

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

4V9L|1|CA|U|367
4V9L|1|CA|U|368
4V9L|1|CA|C|369
*
4V9L|1|CA|G|392
4V9L|1|CA|A|393

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CP

30S ribosomal protein S16

Chain CY

Elongation factor G