IL_4V9L_200

3D structure

PDB id

4V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAG*CUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GAG,CUC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9L_200 not in the Motif Atlas

Geometric match to IL_4NGF_002

Geometric discrepancy: 0.1803

The information below is about IL_4NGF_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V9L|1|CA|G|407
4V9L|1|CA|A|408
4V9L|1|CA|G|409
*
4V9L|1|CA|C|433
4V9L|1|CA|U|434
4V9L|1|CA|C|435

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CD

30S ribosomal protein S4