IL_4V9L_215

3D structure

PDB id

4V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAGUAG*CGCAGAUAC

Length

15 nucleotides

Bulged bases

4V9L|1|CA|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9L_215 not in the Motif Atlas

Homologous match to IL_6CZR_143

Geometric discrepancy: 0.1438

The information below is about IL_6CZR_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37722.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

2

Unit IDs

4V9L|1|CA|G|683
4V9L|1|CA|A|684
4V9L|1|CA|G|685
4V9L|1|CA|U|686
4V9L|1|CA|A|687
4V9L|1|CA|G|688
*
4V9L|1|CA|C|699
4V9L|1|CA|G|700
4V9L|1|CA|C|701
4V9L|1|CA|A|702
4V9L|1|CA|G|703
4V9L|1|CA|A|704
4V9L|1|CA|U|705
4V9L|1|CA|A|706
4V9L|1|CA|C|707

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CK

30S ribosomal protein S11

Chain DA

Large subunit ribosomal RNA; LSU rRNA