IL_4V9L_219

3D structure

PDB id

4V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAC*GUAC

Length

7 nucleotides

Bulged bases

4V9L|1|CA|A|1394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9L_219 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.2809

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

27

Unit IDs

4V9L|1|CA|G|922
4V9L|1|CA|A|923
4V9L|1|CA|C|924
*
4V9L|1|CA|G|1392
4V9L|1|CA|U|1393
4V9L|1|CA|A|1394
4V9L|1|CA|C|1395

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CE

30S ribosomal protein S5