IL_4V9L_313
3D structure
- PDB id
- 4V9L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- GAG*CUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary: GAG,CUC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V9L_313 not in the Motif Atlas
- Geometric match to IL_4V88_385
- Geometric discrepancy: 0.1554
- The information below is about IL_4V88_385
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
4V9L|1|DA|G|1485
4V9L|1|DA|A|1486
4V9L|1|DA|G|1487
*
4V9L|1|DA|C|1502
4V9L|1|DA|U|1503
4V9L|1|DA|C|1504
Current chains
- Chain DA
- 23S ribosomal RNA
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AF
- 30S ribosomal protein S6
- Chain AO
- 30S ribosomal protein S15
- Chain DD
- 50S ribosomal protein L2
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