IL_4V9L_343

3D structure

PDB id

4V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9L_343 not in the Motif Atlas

Homologous match to IL_7A0S_084

Geometric discrepancy: 0.2265

The information below is about IL_7A0S_084

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.7

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

40

Unit IDs

4V9L|1|DA|G|2454
4V9L|1|DA|G|2455
*
4V9L|1|DA|C|2496
4V9L|1|DA|A|2497
4V9L|1|DA|C|2498

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D0

50S ribosomal protein L27

Chain DE

50S ribosomal protein L3

Chain DQ

50S ribosomal protein L16