IL_4V9L_373

3D structure

PDB id

4V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGAACUCUG*CUGUC

Length

14 nucleotides

Bulged bases

4V9L|1|BA|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9L_373 not in the Motif Atlas

Geometric match to IL_8VTW_350

Geometric discrepancy: 0.1117

The information below is about IL_8VTW_350

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.2

Basepair signature

cWW-tHW-L-cWW-cWW-tSH-cWW-R-L-L

Number of instances in this motif group

6

Unit IDs

4V9L|1|BA|G|1666
4V9L|1|BA|G|1667
4V9L|1|BA|A|1668
4V9L|1|BA|A|1669
4V9L|1|BA|C|1670
4V9L|1|BA|U|1671
4V9L|1|BA|C|1672
4V9L|1|BA|U|1673
4V9L|1|BA|G|1674
*
4V9L|1|BA|C|1990
4V9L|1|BA|U|1991
4V9L|1|BA|G|1992
4V9L|1|BA|U|1993
4V9L|1|BA|C|1994

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L3

Chain BO

50S ribosomal protein L14