IL_4V9L_377

3D structure

PDB id

4V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9L_377 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.2109

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4V9L|1|CA|G|409
4V9L|1|CA|G|410
4V9L|1|CA|A|411
4V9L|1|CA|A|412
4V9L|1|CA|G|413
4V9L|1|CA|A|414
4V9L|1|CA|A|415
4V9L|1|CA|G|416
*
4V9L|1|CA|U|427
4V9L|1|CA|G|428
4V9L|1|CA|U|429
4V9L|1|CA|A|430
4V9L|1|CA|A|431
4V9L|1|CA|A|432
4V9L|1|CA|C|433

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CD

30S ribosomal protein S4