IL_4V9L_379

3D structure

PDB id

4V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGG*UU

Length

5 nucleotides

Bulged bases

4V9L|1|CA|G|926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9L_379 not in the Motif Atlas

Homologous match to IL_5J7L_040

Geometric discrepancy: 0.4713

The information below is about IL_5J7L_040

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

4V9L|1|CA|G|925
4V9L|1|CA|G|926
4V9L|1|CA|G|927
*
4V9L|1|CA|U|1390
4V9L|1|CA|U|1391

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CV

messenger RNA

Chain CW

Transfer RNA; tRNA