IL_4V9L_380

3D structure

PDB id

4V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

4V9L|1|DA|U|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9L_380 not in the Motif Atlas

Homologous match to IL_9DFE_046

Geometric discrepancy: 0.1798

The information below is about IL_9DFE_046

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

4V9L|1|DA|C|1208
4V9L|1|DA|G|1209
4V9L|1|DA|A|1210
4V9L|1|DA|U|1211
4V9L|1|DA|G|1212
4V9L|1|DA|A|1213
4V9L|1|DA|A|1214
4V9L|1|DA|G|1215
*
4V9L|1|DA|U|1234
4V9L|1|DA|G|1235
4V9L|1|DA|G|1236
4V9L|1|DA|A|1237
4V9L|1|DA|G|1238

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DU

50S ribosomal protein L20