IL_4V9M_022

3D structure

PDB id

4V9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-4.2A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9M_022 not in the Motif Atlas

Geometric match to IL_4LFB_019

Geometric discrepancy: 0.176

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4V9M|1|AA|G|450
4V9M|1|AA|A|451
4V9M|1|AA|A|452
4V9M|1|AA|A|453
4V9M|1|AA|C|454
4V9M|1|AA|C|455
*
4V9M|1|AA|G|477
4V9M|1|AA|A|478
4V9M|1|AA|C|479
4V9M|1|AA|U|480
4V9M|1|AA|G|481
4V9M|1|AA|A|482
4V9M|1|AA|C|483

Current chains

Chain AA

ribosomal RNA 16S

Nearby chains

Chain AP

30S ribosomal protein S16