IL_4V9M_315

3D structure

PDB id

4V9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-4.2A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UG*CAAAAG

Length

8 nucleotides

Bulged bases

4V9M|1|DA|A|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9M_315 not in the Motif Atlas

Homologous match to IL_7RQB_061

Geometric discrepancy: 0.4741

The information below is about IL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52493.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

4V9M|1|DA|U|1481
4V9M|1|DA|G|1483
*
4V9M|1|DA|C|1506
4V9M|1|DA|A|1508
4V9M|1|DA|A|1509
4V9M|1|DA|A|1510
4V9M|1|DA|A|1511
4V9M|1|DA|G|1512

Current chains

Chain DA

23S ribosomal RNA

Nearby chains