IL_4V9M_361

3D structure

PDB id

4V9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-4.2A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GGG*CGAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9M_361 not in the Motif Atlas

Homologous match to IL_7A0S_100

Geometric discrepancy: 0.2463

The information below is about IL_7A0S_100

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_05502.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

4V9M|1|DA|G|2843
4V9M|1|DA|G|2844
4V9M|1|DA|G|2845
*
4V9M|1|DA|C|2871
4V9M|1|DA|G|2872
4V9M|1|DA|A|2873
4V9M|1|DA|C|2874

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DR

50S ribosomal protein L17

Chain DT

50S ribosomal protein L19