IL_4V9N_021

3D structure

PDB id

4V9N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGGCCAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9N_021 not in the Motif Atlas

Homologous match to IL_4LFB_020

Geometric discrepancy: 0.1781

The information below is about IL_4LFB_020

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

4V9N|1|AA|C|504
4V9N|1|AA|G|505
4V9N|1|AA|G|506
4V9N|1|AA|C|507
4V9N|1|AA|C|508
4V9N|1|AA|A|509
4V9N|1|AA|A|510
4V9N|1|AA|C|511
*
4V9N|1|AA|G|540
4V9N|1|AA|G|541

Current chains

Chain AA

16S rRNA (1504-MER)

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AL

30S ribosomal protein S12

Chain AV

messenger RNA (5'-R(*AP*AP*UP*GP*UP*AP*G)-3')