IL_4V9N_030

3D structure

PDB id

4V9N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

4V9N|1|AA|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9N_030 not in the Motif Atlas

Homologous match to IL_4LFB_029

Geometric discrepancy: 0.0808

The information below is about IL_4LFB_029

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

4V9N|1|AA|G|662
4V9N|1|AA|A|663
4V9N|1|AA|G|664
4V9N|1|AA|A|665
4V9N|1|AA|G|666
*
4V9N|1|AA|U|740
4V9N|1|AA|G|741
4V9N|1|AA|G|742
4V9N|1|AA|U|743

Current chains

Chain AA

16S rRNA (1504-MER)

Nearby chains

Chain AF

30S ribosomal protein S6

Chain AO

30S ribosomal protein S15

Chain AR

30S ribosomal protein S18