3D structure

PDB id
4V9N (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
GAGUAG*CGCAGAUAC
Length
15 nucleotides
Bulged bases
4V9N|1|AA|A|702
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V9N_032 not in the Motif Atlas
Homologous match to IL_4LFB_031
Geometric discrepancy: 0.1006
The information below is about IL_4LFB_031
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_95727.1
Basepair signature
cWW-L-tSH-L-tHW-tHS-R-cWW-L
Number of instances in this motif group
1

Unit IDs

4V9N|1|AA|G|683
4V9N|1|AA|A|684
4V9N|1|AA|G|685
4V9N|1|AA|U|686
4V9N|1|AA|A|687
4V9N|1|AA|G|688
*
4V9N|1|AA|C|699
4V9N|1|AA|G|700
4V9N|1|AA|C|701
4V9N|1|AA|A|702
4V9N|1|AA|G|703
4V9N|1|AA|A|704
4V9N|1|AA|U|705
4V9N|1|AA|A|706
4V9N|1|AA|C|707

Current chains

Chain AA
16S rRNA (1504-MER)

Nearby chains

Chain AK
30S ribosomal protein S11
Chain BA
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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